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Score entropy discrete diffusion models for protein design
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Evals for structure-prediction models
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Protein transformers from scratch video series
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Onramp to deep learning for biologists
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What good is a protein language model?
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Novel enzymes from a diffusion model (paper review)
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The problem* with ProteinGym
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Protein design with graph attention networks (GATs)
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Use ML for what it's good at (not what it's bad at)
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Introducing a powerpack for PyMOL
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Why is progress slow in generative AI for biology?
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A very tough eval for protein language models
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Fun with molecular transformers
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Attention on protein structures
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Containerizing workflows for biology can be scary
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Trends in protein science at NeurIPS 2023
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UniProt is like a candy store
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Can ML do extraordinary things?
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Why do LLMs make you more creative?
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Ablation studies on LLMs from Apple
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Like AlphaFold, but with ligands (paper review)
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Multistate protein design with AlphaFold and ProteinMPNN
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What is MNIST for biology?
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It's important to hand-label your data
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Enzyme engineering for eating plastic (paper review)
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Structural biology behind a new cancer treatment
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Simple, hackable transformers for protein design
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Design highly expressed genes with Espresso
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Using generative ML to design native-looking genes
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Updated guide to tools for computational biology
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Data science in everyday life
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Inverse folding unrolled (part 3)
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Inverse folding unrolled (part 2)
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Inverse folding unrolled (part 1)
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AI-powered protein structure viewer for iPad
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Some simple PyTorch data loaders for bio data
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The Python bioinformatics ecosystem
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Transformer models tackle protein variant effect prediction
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The joys of analog music
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What is the name of your project?
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The documentation habit
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The mighty "Molecule of the Month"
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The only thing missing is your imagination
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AI-powered protein structure viewer
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How to share RosettaScripts with the community
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How to contibute to an existing Git project
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Guide to becoming a computational biologist
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Use version control for your laboratory protocols
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You can Bash that
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Gibson assembly into pET29b(+)
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How to design oligos for Kunkel mutagenesis
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How to run Rosetta in parallel with SLURM
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How to fit data to find Michaelis-Menten kinetics
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Parameterizing ligands for Rosetta